E Mon 13 Jan 2009 8 May 2009 X { 19 Jan 2009, 16 Feb 2009, 16 Mar 2009, 13 Apr 2009 } Office Hours IACC 258A26 E Mon 6 Apr 2009 8 May 2009 X { 13 Apr 2009 ...

Data Mining in Science Seminar Fall 2009 Days: Wednesday Time: 9 9:50 AM Instructor: Anne Denton Each person should find a slots for presenting by Sept. 7. Sign ...

Denton Class Pages IntroductionToBioinformatics FilesForDatabaseSystemsFALL2006 Fall 2006 IntroductionToComputerScienceFALL2006 Fall 2006 DataMiningInScienceSeminarFALL2009 ...

Data Mining in Science Seminar Fall 2008 Days: Friday Time: 9 9:50 AM Instructor: Anne Denton Each person should find a slots for presenting by Sept. 8. Sign up ...

E Mon 22 Jan 2007 30 Apr 2007 Office Hours IACC 258A26 E Mon 22 Jan 2007 30 Apr 2007 Lecture 732 IACC 106 E Tue 9 Jan 2007 1 Aug 2007 X { 16 ...

!LaTeX Tips General Issues Sample files (top) Attached are sample files for writing a paper. Please use these regardless of whether you expect your paper to be ...

Data Mining in Science Seminar Fall 2007 Days: Wednesday Time: 9 9:50 AM Instructor: Anne Denton Each person should find a slots for presenting by Sept. 29. Sign ...

ProjectPage07a: A classification approach to the prediction of fitness as a result of interbreeding of populations Literature Review 1 Nov Yongjiu Chen ...

Relational Databases A relational database is a database that conforms to the relational model for database management (database model based on predicate logic and ...

Hypothesis Testing Hypothesis Testing (also refer to as Statistical Hypothesis Testing) is an algorithm to state the alternative (for or against the hypothesis) which ...

Discrete Mathematics Discrete mathematics is the study of mathematical structures that are fundamentally discrete, meaning they ignore the notion of continuity. Discrete ...

Cell Biology Cell biology studies cells' physiological properties, their structure, the organelles they contain, interactions with their environment, their life cycle ...

Physical Chemistry Physical chemistry is the application of physics to macroscopic, microscopic, atomic, subatomic, and particulate phenomena in chemical systems ...

Molecular Biology Molecular biology is the study of biology at a molecular level. The field overlaps with other areas of biology and chemistry, particularly genetics ...

Proteins are chains amino acids linked together by peptide bond. There are two two terminals, N terminal having free amino group and C terminal containing free carboxyl ...

Protein Structure A Study of Fragment Based Protein Structure Prediction In the Fragment based protein structure prediction method the energetic fluctuation of ...

AtGenProject (Anne Denton Fall 07) AnneDenton 12 Sep 2007 functional genomics Understanding the function of genes and other parts of the genome is known as functional ...

ShyamenAbeysekara 12 Sep 2007 Statistical physics is one of the fundamental theories of physics, and uses methods of statistics in solving physical problems. It can ...

Classification/Regression A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis Multicategory support ...

Cluster Analysis cluster analysis uses a number of different algorithms and methods to group objects of similar kind into different categories. It helps to organize ...

Probability Distribution Probability is the branch of mathematics which considers two or more events simultaneously. The vents can be independent or dependent on ...

A new approach based on the classic Traveling Salesman Problem is presented to study interactions between proteins. In this technique, the global optimization tool ...

ShyamenAbeysekara 12 Sep 2007 The branch of mathematics concerned with the study of vectors, vector spaces, linear maps and systems of linear equations are called ...

ShyamenAbeysekara 12 Sep 2007 Computational chemistry is the branch of theoretical chemistry whose major goals are to create efficient computer programs that calculate ...

Comparative genomics compare the genome of two different individuals or species. It compares the similarities and difference between the proteins, RNA and other regulatory ...

ShyamenAbeysekara 12 Sep 2007 Enzyme kinetics refers to the study of the rate at which an enzyme works. This provides insights into vast array of important aspects ...

ShyamenAbeysekara 12 Sep 2007 Metabolomics technique used in Systems Biology Systems biology can be defined as the use of interdisciplinary tools to obtain, integrate ...

ShyamenAbeysekara 12 Sep 2007 Metabolic pathways Biochemistry is the study of the chemical processes and transformations in living organisms. In biochemistry, a ...

BrandonKnutson 12 Sep 2007 Data mining has been defined as "the nontrivial extraction of implicit, previously unknown, and potentially useful information from data ...

Here is an example of a multi national project to uncover the functional information in arabidopsis. http://web.uni frankfurt.de/fb15/botanik/mcb/AFGN/atgenex.htm ...

Yeast Two Hybrid Experiments These are experiments with which protein protein interaction networks have been created. http://www.staff.kvl.dk/~dacoj3/resource/yeast ...

YeastTwoHybrid AnneDenton 28 Aug 2007

SandeepRaavi 23 Aug 2007

ProbabilityTheoryFall07 DiscreteMathematicsFall07 LinearAlgebraFall07 ComputerProgrammingFall07 StatisticalPhysicsFall07 ClassificationRegressionFall07 HypothesisTestingFall07 ...

PhysicalChemistryFall07 GeneralChemistryFall07 BioChemistryFall07 MolecularBiologyFall07 ComparativeGenomicsFall07 FunctionalGenomicsFall07 ProteinSequenceFall07 ProteinStructureFall07 ...

TopicsInBioinformaticsFall07 TechniquesInBioinformaticsFall07 TopicsInBioinformatics Spring 07 TechniquesInBioinformatics Spring 07 AnneDenton 10 Jan 2007

Journal Listings Data Mining ACM Transactions on Knowledge Discovery from Data (new journal, link to be added) Data Mining and Knowledge Discovery ...

Tentative Title: Correlating protein domains and bacterial properties for entire bacterial genomes Background Normally the function of protein domains is studied ...

Project proposal Biological Aspect: Tools to be used ERGO (Tool for genome analysis by Integrated Genomics, Inc.) and Bergey #8217;s manual. Overview The Bergey ...

ClassSites DentonCalendar Paper Writing Resources http://www.kdkeys.net/forums/2183/ShowPost.aspx JournalListings PaperCitations PaperWritingAndLateX ...

Tentative Title: Relating domains to gene expression experiments Background Normally gene expression data are clustered based on genes Find domains that ...

Tentative Title: Multiple alignments: Applying speech recognition ideas towards improving multiple alignment algorithms Background Speech recognition and sequence ...

Tentative Title: Detecting non expressed genes as part of gene expression clustering using statistical techniques Background Normally significantly expressed ...

Tentative Title: Visualization of networks that represent similarity Background Visualization of networks assists substantially in analysing biological data ...

InformationResource ProjectSite AnneDenton 10 Jan 2007

Statistics for Denton Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and ...

Comparative Genomics Comparative genomics is the study of relationships i.e similarities and differences between the genomes of different species. Comparative genomics ...

ArtificialIntelligence OmarElariss 22 Jan 2007 Technique http://en.wikipedia.org/wiki/Data mining Data mining (DM), also called Knowledge Discovery in Databases ...

Spearman's rank correlation coefficient http://en.wikipedia.org/wiki/Non parametric statistics Occassionally, cases will come where a data set does not meet the assumptions ...

The Poisson Distribution http://en.wikipedia.org/wiki/Poisson distribution The Poisson Distribution is a commonly used probability distribution for discrete data sets ...